The 16 full papers presented at MBAI 2019 and the 7 full papers presented at MFCA 2019 were carefully reviewed and selected. The MBAI papers intend to move forward the state of the art in multimodal brain image analysis, in terms of analysis methodologies, algorithms, software systems, validation approaches, benchmark datasets, neuroscience, and clinical applications. The MFCA papers are devoted to statistical and geometrical methods for modeling the variability of biological shapes. The goal is to foster the interactions between the mathematical community around shapes and the MICCAI community around computational anatomy applications.