This indispensable guide provides several case studies from around the world and creates a framework for identifying management tools and their applications in coral reefs, fisheries, migratory species, marine islands and associated ecosystems such as mangroves and sea grass beds. It discusses the physical and chemical compositions of marine ecosystems along with the threats and actions needed to protect them. The application of model framework to several contemporary management issues include the modelling of harmful algal bloom dynamics, understanding the dispersal of sea lice, and the possible impacts on intertidal communities of the provision of novel offshore habitat. The results of extensive research by an international team of contributors, the is designed to inform scientists, practitioners, academics, government and non-government policymakers on the particularities of marine ecosystems and assist them in understanding the EBM approaches in means of mitigation and adaptation of human activities that result in sustainability. These practices will help change the current methodologies used for resource assessment and the future regulations of marine resources.